SNP Profiles matching POUND 2 /A

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 Key

 1234567891011121314
_Input profile
CCAACCTTTTAATTTTCCCCAAAGCCGG
1._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
2._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
3._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
4._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
5._POUND_2_/A
CCAACCTTTTAATTTTCCCCAAAGCCGG
6._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
7._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
8._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
9._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
10._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
11._GC-01-093-5-10
CCAACCTTTTAATTTTCCCCAAAGCCGG
12._POUND_2_/A
CCAACCTTTTAATTTTCC_AAAGCCGG
13._POUND_25_/A
CCAACCTTTTAATTTTCC_AAAGCCGG
14._MARPER_28
CCAACCTT-AATT-CC-AAAG-GG
15._RUQ_1504
_AACCTT___TT____CCAG
16._RUQ_877
_AACCTT___TT____CCGG
17._MARPER_38
CCAACGTT-AATT-CC-AAAG-GG
18._RUQ_897
_AACGTT___TT____CCGG
19._RUQ_1588
_AACGTT___TT____CCAG
20._RUQ_1334
_AACCTT___TT____CCGG
21._RUQ_515
_AACGTT___TT____CCAG
22._RUQ_468
_AAGGTT___TT____CCGG
23._NA_286
CCAAGGTTTTAATTTTCCCCAAAACCGG
24._GC-01-101-5-18
CCAAGGTTTTAATTTTCCCCAAAACCGG
25._NA_286
CCAAGGTTTTAATT_CCCCAAAACCGG
26._GC-01-101-5-18
CCAAGGTTTTAATT_CCCCAAAACCGG
27._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
28._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
29._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
30._POUND_5_/C
CCAAGGTTTT_TTTTCCCCAAGGCCGG
31._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
32._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
33._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
34._GC-08-165-4-08
CCAAGGTTTT_TTTTCCCCAAGGCCGG
35._MARPER_16
CC-CCTTTTAATTTTCCCC-AACCGG
36._NA_286
CCAAGGTTTTACTTTTCCCCAAAACCGG
37._RUQ_801
_AAGGTT___TT____CCGG
38._RUQ_1587
_AAGGTT___TT____CCGG
39._POUND_5_/C
CCAAGGTTTTCCTTTTCC_AAGGCCGG
 1516171819202122232425262728
_Input profile
TTAAGGCCCCGGGGAACCAAGGGGTTCC
1._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
2._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
3._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
4._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
5._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
6._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
7._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
8._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
9._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
10._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
11._GC-01-093-5-10
TTAAGGCCCCGGGGAACCAAGGGGTTCC
12._POUND_2_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
13._POUND_25_/A
TTAAGGCCCCGGGGAACCAAGGGGTTCC
14._MARPER_28
TTAAGG-CC-GGAACC-GG-TTCC
15._RUQ_1504
____CCGGGG_CCAAGGGGTTCC
16._RUQ_877
____CCCGGG_CCAAGGGG-CC
17._MARPER_38
TTAAGG-CC-GGAACC-GG-CTCC
18._RUQ_897
____CCGGGG_CCAAGGGGCTCC
19._RUQ_1588
____CCGGGG_CCAAGGGGTTCC
20._RUQ_1334
____CCCGGG_CCAAGGGGTTCC
21._RUQ_515
____CCGGGG_CCAAGGGGTTCC
22._RUQ_468
____CCGGGG_CCAAGGGGCTCC
23._NA_286
TTAAGGCCCCGGGGAACCAAGGGGCCCC
24._GC-01-101-5-18
TTAAGGCCCCGGGGAACCAAGGGGCCCC
25._NA_286
TTAAGGCCCCGGGGAACCAAGGGGCCCC
26._GC-01-101-5-18
TTAAGGCCCCGGGGAACCAAGGGGCCCC
27._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
28._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
29._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
30._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
31._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
32._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
33._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
34._GC-08-165-4-08
TTAAGGCCCCGGGGAACCAAGGGGCTCC
35._MARPER_16
TTAAGGCCCCCCGGAACCAAGGGGTTCC
36._NA_286
TTAAGGCCCCGGGGAACCAAGGGGCCCC
37._RUQ_801
____CCGGGG_CCAAGGGGCCCC
38._RUQ_1587
____CCGGGG_CCAAGGGGCCCC
39._POUND_5_/C
TTAAGGCCCCGGGGAACCAAGGGGCTCC
 293031323334353637383940  
_Input profile
AAGGAACCAACCAACCGGCCTTGGX_XX_X
1._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
2._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
3._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
4._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
5._POUND_2_/A
AAGGAACCAACCAACCGGCCTTGGX_XX_X
6._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
7._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
8._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
9._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
10._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
11._GC-01-093-5-10
AAGGAACCAACCAACCGGCCTTGGX_XX_X
12._POUND_2_/A
AAGGAACCAA_AACCGGCCTTGGX_XX_X
13._POUND_25_/A
AAGGAACCAA_AACCGGCCTTGGX_XX_X
14._MARPER_28
AAGG-CCAA---GG-TT-X_XX_X
15._RUQ_1504
AA_AACCAACCAACCGGCC__X_XX_X
16._RUQ_877
AA_AACCAACCAACCGGCC__X_XX_X
17._MARPER_38
AAGG-CCAA---GG-TT-X_XX_X
18._RUQ_897
AA_AACCAACCAACCGGCC__X_XX_X
19._RUQ_1588
AA_AACCAACCAACCGGCC__X_XX_X
20._RUQ_1334
AA_AACCAGCCAACCGGCC__X_XX_X
21._RUQ_515
AA_AACCAGCCAACCGGCC__X_XX_X
22._RUQ_468
AA_AACCAACCAACCGGCC__X_XX_X
23._NA_286
AAGGAACCAACCAACCGGCCTTGGX_XX_X
24._GC-01-101-5-18
AAGGAACCAACCAACCGGCCTTGGX_XX_X
25._NA_286
AAGGAACCAACCAACCGGCCTTGGX_XX_X
26._GC-01-101-5-18
AAGGAACCAACCAACCGGCCTTGGX_XX_X
27._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
28._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
29._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
30._POUND_5_/C
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
31._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
32._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
33._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
34._GC-08-165-4-08
AAGGAACCAGCCAACCGGCCTTGGX_XX_X
35._MARPER_16
AAGGAACCGG-AACCGGCCTTGGX_XX_X
36._NA_286
AAGGAACCAACCAACCGGCCTTGGX_XX_X
37._RUQ_801
AA_AACCAACCAACCGGCC__X_XX_X
38._RUQ_1587
AA_AACCAACCAACCGGCC__X_XX_X
39._POUND_5_/C
AAGGAACCAG_AACCGGCCTTGGX_XX_X

Input profile: POUND_2_/A

 
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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

1._POUND_2_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._POUND_2_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

3._POUND_2_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

4._POUND_2_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

5._POUND_2_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

6._POUND_2_/A GC-01-093-5-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._POUND_2_/A GC-01-093-5-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._POUND_2_/A GC-01-093-5-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._POUND_2_/A GC-01-093-5-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

10._POUND_2_/A GC-01-093-5-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

11._POUND_2_/A GC-01-093-5-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._POUND_2_/A

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

13._POUND_25_/A

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

14._MARPER_28

identical
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

15._NA_232 RUQ_1504

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._CRU_100 RUQ_877

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._MARPER_38

96.2 %
26 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

18._CRU_70 RUQ_897

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._NA_710 RUQ_1588

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_916 RUQ_1334

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_27 RUQ_515

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._NA_756 RUQ_468

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NA_286

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

24._NA_286 GC-01-101-5-18

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

25._NA_286

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._NA_286 GC-01-101-5-18

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

27._POUND_5_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._POUND_5_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

29._POUND_5_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

30._POUND_5_/C

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

31._POUND_5_/C GC-08-165-4-08

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._POUND_5_/C GC-08-165-4-08

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._POUND_5_/C GC-08-165-4-08

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

34._POUND_5_/C GC-08-165-4-08

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

35._MARPER_16

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 750A
 Dapeng Zhang, 2014

36._NA_286

92.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

37._NA_149 RUQ_801

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._NA_702 RUQ_1587

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

39._POUND_5_/C

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25